1. http://www.metaboanalyst.ca for statiscal calculation, based on xcms, but user-friendly workflow and UI. ID based on exact mass only.
2. https://xcmsonline.scripps.edu/landing_page.php?pgcontent=mainPage XCMS online version. Need to sign in and upload files. Allows statistical treatment and match with METLIN database.
3. http://mona.fiehnlab.ucdavis.edu/downloads MoNA repository of MS/MS database for spectral similarity search. Downloadable .
4. http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/ MS-DIAL allows peak matching for DIA experiment and MS/MS search for data-dependent workflow. Needs to convert data to abf format with https://www.reifycs.com/AbfConverter/.
5. https://msbi.ipb-halle.de/MetFrag/ MetFrag allows in silico fragmentation search
6. https://msbi.ipb-halle.de/MetFusion/ MetFusion allows in silico AND MS/MS search from selected database.
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